Show Features on the DNA Line
How do I display features on the DNA line in Map view?
In Map view click the Show Features on the DNA Line button to toggle display of Features centered on the DNA line.
User Guides
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Topics
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Installation
9
- Download, Install and Register SnapGene
- Adjust the Configuration
- Command Line: Installation and Activation
- Manage A SnapGene Subscription or Permanent License
- Cancel a Recurring Subscription License
- Unregister the Computer You Are Using
- Unregister a Computer Remotely
- Reactivate a Blacklisted Computer
- Set Up or Manage a Shared License Server
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Preferences
32
- Open Full Screen Windows By Default
- Hide or Show the Description Panel By Default
- Show the Launch Window on macOS
- Configure Dark Mode and Background Color
- Set the Background Color (SnapGene 6.0 and earlier)
- Set the Default Font Size for New Files
- Set the Default Transformation Strain
- Set When SnapGene Checks for Updates
- Choose if SnapGene Sends Anonymous Statistics and Crash Reports
- Reset All Warning Messages
- Set the Default Location for Opening and Saving Files
- Set the Default Author For Files and Collections
- Set the Ancestor Limit for History Trees
- Set the Default Export Formats (SnapGene 6.0 or earlier)
- GenBank Export Customization
- Set the "Molecule Type" for Imported GenBank Files
- Prohibit /label Qualifiers in Exported GenBank Files
- Transfer Source Features During Cloning Simulations
- Set the Default Display Preferences for New Collections
- Set the Display Preferences for New and Imported DNA Sequences
- Set the Display Preferences for New and Imported RNA Sequences
- Display Feature Labels Below or Inside a Map
- Italicize Restriction Enzyme Names
- Don't Highlight Unique Cutters in Bold
- Highlight Blunt Cutters in Green
- Set the Default Primer Hybridization Parameters Used for New or Imported Sequences
- Show Full Structures for Primer-Template Duplexes
- Set the Default Display Preferences for New Protein Sequences
- Prohibit Region Labels Above a Protein Map
- Show Protein Molecular Weights in Daltons
- Set the Default Stringency for Hiding Chromatogram Ends
- Set Preferences for Agarose Gel Simulations
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Display Options for DNA Sequences
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- Change View Options for DNA Sequences
- Display a Circular Plasmid as a Linear (Horizontal) Map
- Show or Hide DNA Feature Labels
- Show Restriction Site or Primer Coordinates on a Map
- Show Features on the DNA Line
- Display a DNA Sequence Minimap
- Display Sequence as Plain Text
- Show a Translated CDS in 3-Letter Format
- Display the reverse complement of a dsDNA sequence
- Move the origin in a plasmid
- Set the Origin Coordinate for a Linear Sequence
- Adjust Line Width in Sequence View
- Show or Hide Sequences Aligned to a Reference Sequence
- View Sequence in Blocks of 3 or 10
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Display Options for Protein Sequences
10
- Change View Options for Protein Sequences
- Show or Hide Protein Features
- Customize Protein Sequence Colors
- Show or Hide Protein Colors
- Hide or Show Protein Region Labels
- Show or Hide Protein Feature Numbering in Map View
- Show or Hide a Protein Minimap in Sequence View
- Show a Protein Sequence in Compact Format
- Display a Protein Sequence with One or Three Letter Amino Acid Codes
- Change the Protein Sequence Line Width
- Other Display Options 7
- Description Panel 4
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Enzymes
13
- Show or Hide Individual Enzymes
- Choose an Enzyme Set
- Choose Enzymes Manually
- Highlight an Enzyme Site
- Display a Restriction Site Overview
- Sort Enzymes
- View Enzyme Information
- View Noncutters
- Save or Export Enzyme Set
- Manage Enzyme Sets
- Set the Preferences for Enzymes
- Add a Restriction Site to a Coding Sequence Without Changing the Translation
- Remove a Restriction Site From a Coding Sequence Without Changing the Translation
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Features
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- Create a Simple Feature
- Create a Translated Feature
- Adjust Translated Feature Numbering
- Create a Feature Segment
- Annotate Introns
- Add a Cleavage Arrow
- Create a Point Feature
- Edit Multiple Features
- Delete Features
- Confirm an In-Frame Gene Fusion
- Set the Genetic Code for a Feature
- Designate a Non-ATG Start Codon
- Show or Hide Features
- Sort the Feature List
- Import Feature Data
- Export Feature Data
- Splice to Remove Introns
- Detect Common Features
- Detect Custom Features
- Edit Common Features
- Share Custom Feature List
- Add Reference Information to a Feature
- Create a Feature with Introns Using an Aligned cDNA
- Prioritize Display of Features in Map View
- Edit Feature Qualifiers
- Custom Feature Types (SnapGene 6.0 and later) 6
- Primers 8
- Translations 6
- Colors 4
- Searching 4
- Zooming 3
- History 2
- RNA 5
- Proteins 4
- Restriction Cloning and Linear Ligation 7
- Gateway Cloning® 2
- Gibson Assembly® 3
- NEBuilder HiFi DNA Assembly® 3
- In-Fusion® Cloning 2
- TA or GC Cloning 1
- TOPO® Cloning 3
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Golden Gate Assembly
6
- Golden Gate Cloning of a Single Fragment into a Vector
- Golden Gate Cloning of Multiple Fragments into a Vector with Type IIS Sites
- Golden Gate Cloning of Multiple Fragments into a Vector with no Golden Gate sites
- Golden Gate Cloning into a Vector Cut with non-Type IIS Enzymes
- Set the Enzymes for Golden Gate Assembly
- How is Golden Gate Fidelity Predicted in SnapGene?
- PCR and Mutagenesis 4
- Agarose Gel Simulation 11
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Collections
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- Make a New Collection
- Collection Areas
- Designate a Main Collection
- Open a Collection
- Add Files to a Collection
- Organize Sequences in a Collection
- Import from a Database to a Collection
- Export Files from a Collection
- Save Changes in a Collection
- Adjust the Collection Display Options
- Permanently Change a Collection's Display Settings
- Rename a File or Folder in a Collection
- Search a Collection
- Do Bulk Replacement in a Collection
- Define a Working Set in a Collection
- Specify a Description and Authors for a Collection
- Configure Code Numbers for a Collection
- Create Links Between Collection Areas
- Bulk edit the Description Information of multiple Sequences
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Batch Operations
8
- Add Description Data to Multiple Sequences
- Add Common Features to Multiple DNA Sequences
- Import Features into Multiple SnapGene Files
- Import Primers into Multiple SnapGene Files
- Flip Multiple DNA Sequences
- Blast Multiple Sequences
- Batch Convert Sequence Files to a New Format
- Batch Trim File Histories
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Importing and Exporting
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- Import a Sequence from NCBI
- Import a Multisequence FASTA or GenBank File
- Import a Published Plasmid Sequence
- Import a Vector NTI Database
- Import Features from a GTF, GFF3, or BED File
- Import a BAM or SAM File
- Export a DNA Sequence
- Export Part of a DNA Sequence
- Export an Alignment
- Export a Protein Sequence
- Export Part of a Protein Sequence
- Export a DNA, RNA or Protein Map as an Image
- Export the Consensus from a DNA or Protein Multiple Alignment
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Editing Sequences
10
- Create a New DNA or RNA Sequence
- Edit a DNA or RNA sequence
- Edit a Sanger (.ab1, .scf or .ztr) Trace File
- Edit DNA Ends
- Circularize or Linearize a DNA Sequence
- Extract a Restriction Fragment from a Sequence
- Extract a Region in a Sequence to a New File
- Edit the Sequence Name Label
- View or Use IUPAC Ambiguity Codes
- Copy a DNA or RNA Sequence to the Clipboard
- Assembly and Alignment 4
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Pairwise and Multiple Alignment
9
- Create a Pairwise DNA Alignment
- Create a Pairwise Protein Alignment
- Create a Multiple Sequence Alignment
- Reorder or Rename Sequences in a Multiple Alignment
- Repeat an Alignment with an Alternative Algorithm, New Parameters or Changed Input
- Convert a DNA Alignment to a Protein Alignment
- View Features in Multiple Sequence Alignments
- View or Edit Features in a Multiple Alignment
- View or Edit Features in a Pairwise Alignment
- Single Stranded Sequences 2
- Designing Sequences 7
- Codon Usage 4
- Electronic Laboratory Notebooks 1
- Command Line Interface 2
- Blast 2
- Localization 1
- ShortCuts 1