User Guides
If you have a question about a topic that is not covered here or in our FAQ, then please contact us.
Topics
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Installation
9
- Download, Install and Register SnapGene
- Adjust the Configuration
- Command Line: Installation and Activation
- Manage A SnapGene Subscription or Permanent License
- Cancel a Recurring Subscription License
- Unregister the Computer You Are Using
- Unregister a Computer Remotely
- Reactivate a Blacklisted Computer
- Set Up or Manage a Shared License Server
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Preferences
29
- Open Full Screen Windows By Default
- Hide or Show the Description Panel By Default
- Show the Launch Window on macOS
- Set the Background Color
- Set the Default Font Size for New Files
- Set the Default Transformation Strain
- Set When SnapGene Checks for Updates
- Choose if SnapGene Sends Anonymous Statistics and Crash Reports
- Reset All Warning Messages
- Set the Default Location for Opening and Saving Files
- Set the Default Author For Files and Collections
- Set the Ancestor Limit for History Trees
- Set the Default Export Formats
- Set the "Molecule Type" for Imported GenBank Files
- Prohibit /label Qualifiers in Exported GenBank Files
- Transfer Source Features During Cloning Simulations
- Set the Default Display Preferences for New Collections
- Set the Display Preferences for New and Imported DNA Sequences
- Set the Display Preferences for New and Imported RNA Sequences
- Display Feature Labels Below or Inside a Map
- Italicize Restriction Enzyme Names
- Don't Highlight Unique Cutters in Bold
- Highlight Blunt Cutters in Green
- Show Full Structures for Primer-Template Duplexes
- Set the Default Display Preferences for New Protein Sequences
- Prohibit Region Labels Above a Protein Map
- Show Protein Molecular Weights in Daltons
- Set the Default Stringency for Hiding Chromatogram Ends
- Set Preferences for Agarose Gel Simulations
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Display Options for DNA Sequences
14
- Change View Options for DNA Sequences
- Display a Circular Plasmid as a Linear (Horizontal) Map
- Show or Hide DNA Feature Labels
- Show Restriction Site or Primer Coordinates on a Map
- Show Features on the DNA Line
- Display a DNA Sequence Minimap
- Display Sequence as Plain Text
- Show a Translated CDS in 3-Letter Format
- Display the reverse complement of a dsDNA sequence
- Move the origin in a plasmid
- Set the Origin Coordinate for a Linear Sequence
- Adjust Line Width in Sequence View
- Show or Hide Sequences Aligned to a Reference Sequence
- View Sequence in Blocks of 3 or 10
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Display Options for Protein Sequences
10
- Change View Options for Protein Sequences
- Show or Hide Protein Features
- Customize Protein Sequence Colors
- Show or Hide Protein Colors
- Hide or Show Protein Region Labels
- Show or Hide Protein Feature Numbering in Map View
- Show or Hide a Protein Minimap in Sequence View
- Show a Protein Sequence in Compact Format
- Display a Protein Sequence with One or Three Letter Amino Acid Codes
- Change the Protein Sequence Line Width
- Other Display Options 7
- Description Panel 4
- Enzymes 11
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Features
25
- Create a Simple Feature
- Create a Translated Feature
- Adjust Translated Feature Numbering
- Create a Feature Segment
- Annotate Introns
- Add a Cleavage Arrow
- Create a Point Feature
- Edit Multiple Features
- Delete Features
- Confirm an In-Frame Gene Fusion
- Set the Genetic Code for a Feature
- Designate a Non-ATG Start Codon
- Show or Hide Features
- Sort the Feature List
- Import Feature Data
- Export Feature Data
- Splice to Remove Introns
- Detect Common Features
- Detect Custom Features
- Edit Common Features
- Share Custom Feature List
- Add Reference Information to a Feature
- Create a Feature with Introns Using an Aligned cDNA
- Prioritize Display of Features in Map View
- Edit Feature Qualifiers
- Primers 8
- Translations 6
- Colors 4
- Searching 4
- Zooming 3
- History 2
- RNA 4
- Proteins 4
- Restriction Cloning and Linear Ligation 7
- Gateway Cloning® 1
- Gibson Assembly® 1
- NEBuilder HiFi DNA Assembly® 1
- In-Fusion® Cloning 1
- TA or GC Cloning 1
- TOPO® Cloning 3
- PCR and Mutagenesis 4
- Agarose Gel Simulation 9
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Collections
17
- Make a New Collection
- Collection Areas
- Designate a Main Collection
- Open a Collection
- Add Files to a Collection
- Organize Sequences in a Collection
- Import from a Database to a Collection
- Export Files from a Collection
- Save Changes in a Collection
- Adjust the Collection Display Options
- Rename a File or Folder in a Collection
- Search a Collection
- Do Bulk Replacement in a Collection
- Define a Working Set in a Collection
- Specify a Description and Authors for a Collection
- Configure Code Numbers for a Collection
- Create Links Between Collection Areas
- Batch Operations 6
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Importing and Exporting
13
- Import a Sequence from NCBI
- Import a Multisequence FASTA or GenBank File
- Import a Published Plasmid Sequence
- Import a Vector NTI Database
- Import Features from a GTF, GFF3, or BED File
- Import a BAM or SAM File
- Export a DNA Sequence
- Export Part of a DNA Sequence
- Export an Alignment
- Export a Protein Sequence
- Export Part of a Protein Sequence
- Export a DNA, RNA or Protein Map as an Image
- Export the Consensus from a DNA or Protein Multiple Alignment
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Editing Sequences
10
- Create a New DNA or RNA Sequence
- Edit a DNA or RNA sequence
- Edit a Sanger (.ab1, .scf or .ztr) Trace File
- Edit DNA Ends
- Circularize or Linearize a DNA Sequence
- Extract a Restriction Fragment from a Sequence
- Extract a Region in a Sequence to a New File
- Edit the Sequence Name Label
- View or Use IUPAC Ambiguity Codes
- Copy a DNA or RNA Sequence to the Clipboard
- Assembly and Alignment 4
- Pairwise and Multiple Alignment 6
- Single Stranded Sequences 2
- Designing Sequences 7
- Codon Usage 4
- Electronic Laboratory Notebooks 1
- Command Line Interface 2
- Blast 1
- Localization 1