What are the SnapGene Protein Alignment Color Highlighting Schemes?
SnapGene allows amino acid color highlighting based on three color schemes as detailed below.
Physicochemical Properties (Zappo)
Residues are coloured according to their physicochemical properties as follows:
Properties + Conservation (Clustal X)
Residues are colored according to their properties and conservation using the default Clustal X coloring scheme, as follows:
Transmembrane Tendency (Zhao and London)
Residues are coloured according to their "transmembrane tendency", as defined by Zhao and London, 2006: